gneiss.plot.balance_barplots

gneiss.plot.balance_barplots(tree, balance_name, header, feature_metadata, ndim=5, num_color=’#0000FF’, denom_color=’#0000FF’, xlabel=”, ylabel=”, axes=(None, None))

Plots barplots of counts of features found in the balance.

Parameters:

• tree (skbio.TreeNode) – Reference tree for balances.
• balance_name (str) – Name of balance to plot.
• header (str) – Header name for the feature metadata column to summarize
• feature_metadata (pd.DataFrame) – Contains information about the features.
• ndim (int) – Number of bars to display at a given time (default=5)
• num_color (str) – Hex for background colors of values above zero.
• denom_color (str) – Hex for background colors of values below zero.
• xlabel (str) – x-axis label.
• ylabel (str) – y-axis label.
• axes (tuple of matplotlib axes objects) – Specifies where the barplots should be rendered.

Returns:

• ax_num (matplotlib axes object) – Barplot of the features in the numerator of the balance.
• ax_denom (matplotlib axes object) – Barplot of the features in the denominator of the balance.