gneiss.plot.radialplot

gneiss.plot.radialplot(tree, node_color='node_color', node_size='node_size', node_alpha='node_alpha', edge_color='edge_color', edge_alpha='edge_alpha', edge_width='edge_width', hover_var='hover_var', figsize=(500, 500), **kwargs)[source]

Plots unrooted radial tree.

Parameters:
  • tree (instance of skbio.TreeNode) – Input tree for plotting.
  • node_color (str) – Name of variable in tree to color nodes.
  • node_size (str) – Name of variable in tree that specifies the radius of nodes.
  • node_alpha (str) – Name of variable in tree to specify node transparency.
  • edge_color (str) – Name of variable in tree to color edges.
  • edge_alpha (str) – Name of variable in tree to specify edge transparency.
  • edge_width (str) – Name of variable in tree to specify edge width.
  • hover_var (str) – Name of variable in tree to display in the hover menu.
  • figsize (tuple, int) – Size of resulting figure. default: (500, 500)
  • **kwargs (dict) – Plotting options to pass into bokeh.models.Plot
Returns:

Interactive plotting instance.
Return type:

bokeh.models.Plot

Notes

This assumes that the tree is strictly bifurcating.

See also

bifurcate()