calour.experiment.Experiment.save_fasta¶

Experiment.save_fasta(f, seqs=None)[source]¶

Save a list of sequences to fasta.

Use taxonomy information if available, otherwise just use sequence as header.

Parameters:	f (str) – the filename to save to seqs (list of str sequences ('ACGT') or None, optional) – None (default) to save all sequences in exp, or list of sequences to only save these sequences. Note: sequences not in exp will not be saved