calour.amplicon_experiment.AmpliconExperiment.filter_samples

AmpliconExperiment.filter_samples(field, values, negate=False, inplace=False)[source]

Shortcut for filtering samples.

Parameters:
  • field (str) – the column name of the sample metadata tables
  • values – keep the samples with the values in the given field
  • negate (bool, optional) – discard instead of keep the samples if set to True
  • inplace (bool, optional) – return the filtering on the original Experiment object or a copied one.
Returns:

the filtered object

Return type:

Experiment