calour.amplicon_experiment.AmpliconExperiment.filter_fasta¶

AmpliconExperiment.filter_fasta(filename, negate=False, inplace=False)[source]¶

Filter features from experiment based on fasta file

Parameters:	filename (str) – the fasta filename containing the sequences to use for filtering negate (bool, optional) – False (default) to keep only sequences matching the fasta file; True to remove sequences in the fasta file. inplace (bool, optional) – False (default) to create a copy of the experiment, True to filter inplace
Returns:	newexp – filtered so contains only sequence present in exp and in the fasta file
Return type:	Experiment