AmpliconExperiment.filter_abundance(cutoff=10, **kwargs)[source]¶Filter features with sum abundance across all samples less than the cutoff.
For example, to keep features with mean abundance of 150 use filter_abundance(cutoff=150).
| Parameters: | cutoff (float, optional) – The minimal total abundance across all samples. Default is 10 - keep features with total abundance >= 10. |
|---|---|
| Keyword Arguments: | |
| negate (bool) – negate the predicate for selection | |
| Returns: | |
| Return type: | Experiment |
See also