Curated taxon names without index

Go to GitHub directory.

The numeric suffixes indicating polyphyly were stripped from taxon names, so that they precisely match original GTDB taxon names.

  • lineages.txt: Curated Greengenes-style lineage strings.
  • ranks.tsv: Curated taxonomic assignments by rank.

Note: GTDB uses a similar approach to label polyphyletic groups, but with alphabetical instead of numeric suffixes, such as “Firmicutes_A”.