calour.transforming.transform¶

calour.transforming.transform(exp: calour.experiment.Experiment, steps=[], inplace=False, **kwargs)[source]¶

Chain transformations together.

Note

This function is also available as a class method Experiment.transform()

Note

This function is also available as a class method Experiment.transform()

Parameters:	exp (Experiment) – Input experiment object. exp – Input experiment object. steps (list of callable) – each callable is a transformer that takes Experiment object as its 1st argument and has a boolean parameter of inplace. Each callable should return an Experiment object. inplace (bool) – transformation occuring in the original data or a copy kwargs (dict) – keyword arguments to pass to each transformers. The key should be in the form of “<transformer_name>__<param_name>”. For example, “transform(exp: Experiment, steps=[log_n], log_n__n=3)” will set “n” of function “log_n” to 3
Returns:	with its data transformed
Return type:	Experiment